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MICa 8006
Protein Sequence Analysis

Lab 2


September 15, 2006

GCG: Basic Protein Analysis, list format, graphics

Interrupting GCG modules (control-D)
fromfasta
stringsearch (list format)
Deleting a line in Pico (control-K)
composition (single sequence, list)
peptidesort
peptidestructure
setplot (creating PNG device; selecting it)
plotstructure
Renaming a file in UNIX (mv oldfilename newfilename)
helicalwheel

Perl: arrays, flow of control, functions, counting, random numbers

arrays
FOR loops
FOREACH loops
range in numeric lists (..)
IF statements
string comparisons (eq, ne)
uc function
WHILE loops, Boolean AND
defined function
UNTIL loop
qw for assigning string values to arrays
ELSE in IF statements
lc function
substr function
counting
pseudorandom number generator function
seeding generator with a constant value
seeding generator with a changing value

February 21, 2008 Lynda Ellis

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