MICa 8006 Home
MICa 8006
Protein Sequence Analysis

Lab 3


September 22, 2006

GCG: sequence alignment, .msf format, searching local and remote databases

bestfit
gap
pileup (.msf format)
fasta (non-redundant protein database (nr))
blast
netblast

Perl: associative arrays (hashes), flow of control, functions

FOREACH loops
SPLIT function
hashes (associative arrays)
SCALAR function
KEYS function

February 21, 2008 Lynda Ellis

© 2009, University of Minnesota.
All rights reserved.

[an error occurred while processing this directive]