MICa 8006 Home
MICa 8006
Protein Sequence Analysis

Lab 4


September 29, 2006

GCG: finding sequence patterns

motifs (sensitivity, specificity, short vs long)
hmmerpfam
coilscan
hthscan
spscan
findpatterns

Perl: files, regular expressions

data files: file handles, opening, reading, closing
regular expressions (regexps)
reformatting fasta files for further analysis
searching for patterns in sequences

February 21, 2008 Lynda Ellis

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