The following Internet Resources may be useful to you in this class and in your future work. Let me know if any links have moved or are not working. If you find a useful resource that is not listed here, please send it to the class email list and, after I review it, I will add it to this list.
- Amino Acid Information at Rockefeller University
- A Review of Amino Acids at Curtin University, Australia
- Amino Acid Properties at EMBL, Germany
- PuTTY, a free PC Telnet/SSH Client
- WinSCP by Martin Prikry
- Fugu, a MacOS SFTP
- Unix Help for Users, University of Edinburgh
- Pico Basics
- Free Online Perl Books
- BioPerl
- Free Online Computer Books (OReilly Safari), need UM X.500 authentication
- NCBI Bookshelf, free online searchable biomedical books.
- Dynamic Programming Tutorial, by Eric C. Rouchka.
- WebLogo: Sequence Logos at UC Berkley
- Database Searching and Sequence Scoring Tutorial, by Hugh B. Nicholas Jr., David W. Deerfield II., and Alexander J. Ropelewski
- Hidden Markov Models and Protein Sequence Alignment, by Racheal Karchin
- Homology Modeling Tutorial by David R. Bevan, Virginia Tech
- Introduction to BLAST Output, NCBI BLAST Tutorial, part 2
- Steve Cannon Lecture 1 - MSA
- Steve Cannon Lecture 2 - Phylogeny
- Eric Klee - Protein Localization Predictions
- Protein Structure Course at Birkbeck College, UK
- GNA-VSNS Biocomputing Course
- Munich Information Centre for Protein Sequences (MIPS)
- University of Manchester's Protein Sequence and Structure Analysis: A practical guide.
- NCBI dbEST Home Page
- A bibliography on Computational Gene Recognition
- NCBI Entrez Cross Database Search
- UM GCG Online Help
- EMBOSS: The European Molecular Biology Open Software Suite
- NCBI BLAST
- Chime Download Page
- You must register before downloading Chime.
- PIR Home Page
- PDB Home Page
- Molecules R Us at NIH
- NIH Center for Molecular Modeling Home Page
- DSSP Home Page (3ary -> 2ndary Structure)
- Protein Stucture Prediction Center (CASP, etc) at University of California, Davis
- LiveBench Structure Prediction Metaserver at the Bioinformatics Laboratory, Poznan, Poland
- EVA: Automatic Evaluation of Protein Structure Prediction Servers, at Columbia University
- BIOSCI bionet Newsgroup Archives, especially
- University of Minnesota Bio-Medical Library
- Bioinformatics
- BMC Bioinformatics
- Nucleic Acids Research
- Protein Science
- Proteins: Structure, Function, and Bioinformatics
- UM Graduate Program in Bioinformatics
- UM Center for Computational Genomics and Bioinformatics
- UM CBS Computing Services (St Paul)
- UM Supercomputing Institute Computational Biology and Genomics
- The Biology Workbench at the San Diego Supercomputer Center
- You must register before using the Biology Workbench.
- ExPASy Sequence Analysis Tools
- Center for Biological Sequence Analysis Prediction Servers from the Department of Biotechnology, The Technical University of Denmark
- The CMS Molecular Biology Resource at the San Diego Supercomputer Center
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